STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_2136Maleylacetoacetate isomerase. (212 aa)    
Predicted Functional Partners:
Bpro_2997
Homogentisate 1,2-dioxygenase.
 
 
 0.981
Bpro_0446
Fumarylacetoacetate (FAA) hydrolase.
 
 
 0.973
Bpro_2996
Fumarylacetoacetate hydrolase.
 
 0.965
Bpro_0991
Maleylacetoacetate isomerase.
  
  
 
0.904
Bpro_4213
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.819
Bpro_1853
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.806
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.633
Bpro_4215
Phenylalanine 4-hydroxylase.
 
  
 0.627
Bpro_0168
Phenylalanine 4-hydroxylase.
 
  
 0.623
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.614
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.