STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_2145Uncharacterized protein UPF0065. (330 aa)    
Predicted Functional Partners:
Bpro_2144
Carboxymuconolactone decarboxylase.
 
     0.820
Bpro_3880
Protein of unknown function DUF112, transmembrane.
 
    0.773
Bpro_2146
Short-chain dehydrogenase/reductase SDR.
 
     0.730
Bpro_2143
Hypothetical protein.
       0.670
Bpro_2142
Uncharacterized protein UPF0065.
 
    
0.646
Bpro_2147
Amidohydrolase 2.
       0.640
Bpro_2011
Protein of unknown function DUF112, transmembrane.
 
    0.633
Bpro_3881
Protein of unknown function DUF1468.
 
    0.627
Bpro_3009
Protein of unknown function DUF112, transmembrane.
 
    0.614
Bpro_2797
Protein of unknown function DUF112, transmembrane.
 
    0.606
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.