STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_2816Extracellular solute-binding protein, family 5. (545 aa)    
Predicted Functional Partners:
Bpro_2812
Binding-protein-dependent transport systems inner membrane component.
 0.975
Bpro_2813
Binding-protein-dependent transport systems inner membrane component.
 0.975
Bpro_2815
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.
 
 0.962
Bpro_2814
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.
 
 
 0.956
Bpro_0137
Binding-protein-dependent transport systems inner membrane component.
 
 0.540
Bpro_4393
Binding-protein-dependent transport systems inner membrane component.
 
 0.520
Bpro_4392
Extracellular solute-binding protein, family 5.
  
  
 
0.515
Bpro_4339
Binding-protein-dependent transport systems inner membrane component.
 
 0.514
Bpro_4344
Extracellular solute-binding protein, family 5.
  
  
 
0.511
Bpro_4340
Binding-protein-dependent transport systems inner membrane component.
 
 0.509
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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