Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bpro_3085Nitroreductase. (258 aa)    
Predicted Functional Partners:
Bpro_3086
Thioesterase superfamily.
       0.785
Bpro_3082
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; TC 3.A.1.4.-.
       0.540
Bpro_3084
Branched-chain amino acid transport system permease protein; TC 3.A.1.4.-; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.540
Bpro_3083
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; TC 3.A.1.4.-.
       0.538
Bpro_3087
Histone deacetylase superfamily.
  
    0.464
tadA
CMP/dCMP deaminase, zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.423
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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