STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_3160Protein of unknown function DUF404. (901 aa)    
Predicted Functional Partners:
Bpro_3161
Transglutaminase-like protein.
 
  
 0.947
Bpro_3159
Transglutaminase-like protein.
 
  
 0.946
Bpro_3155
Transglutaminase-like protein.
 
  
 0.887
Bpro_0068
Transglutaminase-like protein.
 
  
 0.871
Bpro_3338
20S proteasome, A and B subunits.
 
  
 0.795
Bpro_3156
Protein of unknown function DUF403.
 
  
0.692
Bpro_4531
Conserved hypothetical protein.
 
     0.638
Bpro_3157
Protein of unknown function DUF404.
 
  
0.631
Bpro_3158
DNA internalization-related competence protein ComEC/Rec2.
       0.586
Bpro_3003
ATP-dependent DNA ligase LigD polymerase module.
  
    0.493
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.