STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_3168Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (270 aa)    
Predicted Functional Partners:
Bpro_3169
Methyltransferase type 11.
       0.686
dapA-2
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.664
Bpro_3171
NlpBDapX lipoprotein.
       0.622
Bpro_3172
Beta-lactamase-like protein.
     
 0.585
Bpro_3173
Hypothetical protein.
       0.483
Bpro_0129
Short-chain dehydrogenase/reductase SDR.
 
   0.479
Bpro_3788
Short-chain dehydrogenase/reductase SDR.
 
   0.472
Bpro_4087
Short-chain dehydrogenase/reductase SDR.
 
   0.455
Bpro_3167
Major facilitator superfamily MFS_1.
       0.450
Bpro_3558
Transcriptional regulator, TetR family.
  
     0.402
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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