Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_3545Transcriptional regulator, MarR family. (161 aa)    
Predicted Functional Partners:
Bpro_3544
Major facilitator superfamily MFS_1.
 
     0.821
Bpro_3546
Phenylacetic acid degradation-related protein.
 
     0.642
Bpro_3542
MATE efflux family protein.
 
  
 0.616
Bpro_3543
MaoC-like dehydratase.
       0.612
Bpro_3507
TRAP transporter solute receptor, TAXI family.
  
     0.582
Bpro_1065
Hypothetical protein.
  
    0.453
Bpro_3552
OmpA/MotB.
  
     0.449
Bpro_1841
Cupin 2, conserved barrel.
 
    0.448
Bpro_3120
Putative transcriptional regulator.
  
  
 0.447
Bpro_2824
Major facilitator superfamily MFS_1.
 
   
 0.426
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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