STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_3689Transcriptional regulator, IclR family. (278 aa)    
Predicted Functional Partners:
Bpro_3691
Cupin 2, conserved barrel.
 
  
 0.887
Bpro_3687
Thiamine pyrophosphate enzyme-like TPP binding region; Belongs to the TPP enzyme family.
 
     0.856
Bpro_3688
Short-chain dehydrogenase/reductase SDR.
 
    0.856
nadX
Aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
    0.833
Bpro_3690
Alpha/beta hydrolase fold protein.
 
   
 0.826
Bpro_3685
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.770
Bpro_3948
Transcriptional regulator, IclR family.
  
     0.765
Bpro_0445
Transcriptional regulator, IclR family.
  
     0.764
Bpro_3692
Short-chain dehydrogenase/reductase SDR.
 
    0.690
Bpro_3684
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.644
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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