Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_3752Integrase, catalytic region. (772 aa)    
Predicted Functional Partners:
Bpro_3755
Hypothetical protein.
 
    0.917
Bpro_3753
Prophage MuSo1, DNA transposition protein, putative.
 
     0.905
Bpro_3747
Conserved hypothetical protein.
 
    0.807
Bpro_3744
Protein of unknown function DUF1320.
 
    0.801
Bpro_3750
Hypothetical protein.
       0.773
Bpro_3751
Hypothetical protein.
       0.773
Bpro_3784
Phage putative head morphogenesis protein, SPP1 gp7.
 
    0.773
Bpro_3783
Protein of unknown function DUF935.
 
    0.772
Bpro_3782
Conserved hypothetical protein.
 
    0.770
Bpro_3781
Conserved hypothetical phage-related protein.
 
     0.744
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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