STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_3983Polysaccharide biosynthesis protein CapD. (643 aa)    
Predicted Functional Partners:
Bpro_4011
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.921
Bpro_3999
Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.906
Bpro_3985
Sugar transferase.
 
  
 0.871
Bpro_3986
NAD-dependent epimerase/dehydratase.
 
  
 0.838
Bpro_3987
Glycosyl transferase, group 1.
 
  
 0.804
Bpro_3990
Glycosyl transferase, family 2.
  
  
 0.799
Bpro_1877
Polysaccharide export protein.
  
  
 0.787
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.766
Bpro_3984
Histone-like nucleoid-structuring protein H-NS.
       0.735
Bpro_3997
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.704
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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