Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (357 aa)    
Predicted Functional Partners:
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.996
Bpro_4013
NAD-dependent epimerase/dehydratase.
 
0.989
Bpro_3999
Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP).
 
 
 0.988
Bpro_4015
Glycosyl transferase, group 1.
 
  
 0.884
Bpro_3983
Polysaccharide biosynthesis protein CapD.
  
  
 0.848
Bpro_4014
Aldose 1-epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
     
 0.780
Bpro_3985
Sugar transferase.
 
  
 0.746
Bpro_1875
Sugar transferase.
 
  
 0.742
Bpro_4003
ABC transporter related protein.
 
  
 0.663
Bpro_4006
NAD-dependent epimerase/dehydratase.
 
 
 0.654
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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