Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_4375Hypothetical protein. (125 aa)    
Predicted Functional Partners:
Bpro_2804
NAD-dependent formate dehydrogenase flavoprotein subunit.
  
 0.985
Bpro_4374
BFD-like (2Fe-2S)-binding region.
 
    0.951
Bpro_4376
FAD dependent oxidoreductase.
 
    0.948
Bpro_4373
FAD dependent oxidoreductase.
 
    0.935
Bpro_0726
Cytochrome c oxidase, subunit II.
   
 
 0.886
Bpro_4398
BFD-like (2Fe-2S)-binding region.
 
   
 0.796
Bpro_4341
BFD-like (2Fe-2S)-binding region.
 
    0.793
Bpro_4414
BFD-like (2Fe-2S)-binding region.
 
    0.793
Bpro_4425
BFD-like (2Fe-2S)-binding region.
 
   
 0.789
Bpro_0049
BFD-like (2Fe-2S)-binding region.
 
    0.787
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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