Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bpro_0746 | Bpro_0747 | Outer membrane protein (porin)-like protein. | Porin, Gram-negative type. | 0.653 |
Bpro_0746 | Bpro_1834 | Outer membrane protein (porin)-like protein. | Hypothetical protein. | 0.678 |
Bpro_0746 | Bpro_3117 | Outer membrane protein (porin)-like protein. | Porin, Gram-negative type. | 0.674 |
Bpro_0746 | Bpro_3679 | Outer membrane protein (porin)-like protein. | Porin, Gram-negative type. | 0.561 |
Bpro_0746 | Bpro_4315 | Outer membrane protein (porin)-like protein. | Putative transmembrane outer membrane porin signal peptide protein. | 0.649 |
Bpro_0746 | Bpro_4383 | Outer membrane protein (porin)-like protein. | Putative porin precursor transmembrane protein. | 0.575 |
Bpro_0746 | Bpro_4435 | Outer membrane protein (porin)-like protein. | Putative proline rich signal peptide protein. | 0.592 |
Bpro_0746 | Bpro_4558 | Outer membrane protein (porin)-like protein. | Porin, Gram-negative type. | 0.672 |
Bpro_0746 | Bpro_4896 | Outer membrane protein (porin)-like protein. | Protein of unknown function DUF1239. | 0.528 |
Bpro_0747 | Bpro_0746 | Porin, Gram-negative type. | Outer membrane protein (porin)-like protein. | 0.653 |
Bpro_0747 | Bpro_1834 | Porin, Gram-negative type. | Hypothetical protein. | 0.759 |
Bpro_0747 | Bpro_3117 | Porin, Gram-negative type. | Porin, Gram-negative type. | 0.661 |
Bpro_0747 | Bpro_3171 | Porin, Gram-negative type. | NlpBDapX lipoprotein. | 0.683 |
Bpro_0747 | Bpro_3679 | Porin, Gram-negative type. | Porin, Gram-negative type. | 0.649 |
Bpro_0747 | Bpro_4315 | Porin, Gram-negative type. | Putative transmembrane outer membrane porin signal peptide protein. | 0.658 |
Bpro_0747 | Bpro_4383 | Porin, Gram-negative type. | Putative porin precursor transmembrane protein. | 0.669 |
Bpro_0747 | Bpro_4435 | Porin, Gram-negative type. | Putative proline rich signal peptide protein. | 0.719 |
Bpro_0747 | Bpro_4558 | Porin, Gram-negative type. | Porin, Gram-negative type. | 0.639 |
Bpro_0747 | Bpro_4896 | Porin, Gram-negative type. | Protein of unknown function DUF1239. | 0.642 |
Bpro_1834 | Bpro_0746 | Hypothetical protein. | Outer membrane protein (porin)-like protein. | 0.678 |
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