STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_4383Putative porin precursor transmembrane protein. (355 aa)    
Predicted Functional Partners:
Bpro_0747
Porin, Gram-negative type.
  
  
 
0.669
Bpro_4315
Putative transmembrane outer membrane porin signal peptide protein.
  
  
 
0.652
Bpro_1834
Hypothetical protein.
  
 
   0.631
Bpro_4435
Putative proline rich signal peptide protein.
  
     0.617
Bpro_3117
Porin, Gram-negative type.
  
  
 
0.597
Bpro_4896
Protein of unknown function DUF1239.
  
   
 0.593
Bpro_4558
Porin, Gram-negative type.
  
  
 
0.587
Bpro_3679
Porin, Gram-negative type.
  
  
 
0.583
Bpro_0746
Outer membrane protein (porin)-like protein.
  
  
 
0.575
Bpro_3171
NlpBDapX lipoprotein.
  
     0.571
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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