STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_4793RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)    
Predicted Functional Partners:
Bpro_4794
Hypothetical protein.
     
 0.792
Bpro_3699
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.682
Bpro_3642
Anti sigma-E protein, RseA.
  
 
 0.633
Bpro_3390
Sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.558
Bpro_4792
Transposase, IS204/IS1001/IS1096/IS1165.
       0.556
Bpro_4790
Protein of unknown function DUF692; Belongs to the UPF0276 family.
 
    0.544
Bpro_4789
Conserved hypothetical protein.
  
    0.475
Bpro_4791
Hypothetical protein.
  
    0.473
Bpro_4788
DoxX.
 
    0.470
Bpro_4893
Hypothetical protein.
  
 
 0.437
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.