STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bpro_4878Type III effector Hrp-dependent outers domain protein. (427 aa)    
Predicted Functional Partners:
Bpro_4877
Class II aldolase/adducin-like protein.
 
  
 0.931
Bpro_4879
NAD-dependent epimerase/dehydratase.
 
    0.930
Bpro_4876
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.742
Bpro_1872
NAD-dependent epimerase/dehydratase.
 
    0.695
Bpro_0087
Conserved hypothetical protein.
 
   
 0.676
Bpro_4883
3-hydroxyisobutyrate dehydrogenase.
 
  
 0.648
Bpro_4880
TRAP dicarboxylate transporter- DctM subunit.
       0.567
Bpro_0093
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.
 
   
 0.512
Bpro_0032
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.
 
   
 0.483
Your Current Organism:
Polaromonas sp. JS666
NCBI taxonomy Id: 296591
Other names: P. sp. JS666
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