STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS30825.1Hypothetical protein. (387 aa)    
Predicted Functional Partners:
SIS34558.1
Cell surface protein SprA.
  
 
 0.999
SIS30822.1
Peptidase family C25.
 
   
 0.928
SIS30819.1
Gliding motility-associated lipoprotein GldJ.
 
     0.868
SIS43590.1
Cell division protein FtsQ.
 
 
 0.831
ftsI
Penicillin-binding protein 2.
  
 0.823
penA
Cell division protein FtsI (penicillin-binding protein 3).
  
 0.823
SIS39089.1
Protein of unknown function.
  
   
 0.809
SIS45844.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.772
SIS44424.1
Protein of unknown function.
  
     0.771
SIS32261.1
Probable protein-translocating porin PorT.
  
   
 0.754
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.