STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aesPectinesterase. (304 aa)    
Predicted Functional Partners:
pemA_1
Pectinesterase.
  
  0.977
pemA_2
Pectinesterase.
  
  0.954
yesY
Lysophospholipase L1.
  
  0.911
pehX
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
  
  0.856
xynB
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.842
rhgT
Lysophospholipase L1.
  
  0.806
SIS30431.1
Protein of unknown function.
 
  
  0.740
SIS30428.1
Hypothetical protein.
 
  
  0.718
yteR
Unsaturated rhamnogalacturonyl hydrolase.
 
  
  0.710
nqo1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
  0.602
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.