STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS32967.1Conserved hypothetical protein. (227 aa)    
Predicted Functional Partners:
SIS32964.1
L,D-transpeptidase catalytic domain.
 
     0.801
SIS32968.1
Hypothetical protein.
       0.558
SIS32846.1
Predicted nucleotidyltransferase.
  
     0.546
SIS37301.1
Phytanoyl-CoA dioxygenase (PhyH).
  
     0.474
SIS36189.1
WG containing repeat-containing protein.
  
     0.471
SIS32961.1
Hypothetical protein.
       0.433
SIS38194.1
DNA polymerase III, epsilon subunit.
  
     0.428
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.