Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS28287.1 | SIS30694.1 | SAMN05421639_101129 | SAMN05421639_101995 | Putative mRNA 3-end processing factor. | DNA topoisomerase-1. | 0.459 |
SIS28287.1 | SIS41241.1 | SAMN05421639_101129 | SAMN05421639_104649 | Putative mRNA 3-end processing factor. | Bifunctional non-homologous end joining protein LigD. | 0.646 |
SIS28287.1 | SIS41247.1 | SAMN05421639_101129 | SAMN05421639_104650 | Putative mRNA 3-end processing factor. | Bifunctional non-homologous end joining protein LigD. | 0.699 |
SIS28287.1 | lepB | SAMN05421639_101129 | SAMN05421639_102607 | Putative mRNA 3-end processing factor. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.402 |
SIS28287.1 | polA | SAMN05421639_101129 | SAMN05421639_102662 | Putative mRNA 3-end processing factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.871 |
SIS28287.1 | sbcC_2 | SAMN05421639_101129 | SAMN05421639_101776 | Putative mRNA 3-end processing factor. | Exonuclease SbcC. | 0.705 |
SIS28308.1 | SIS41241.1 | SAMN05421639_101136 | SAMN05421639_104649 | BRCA1 C Terminus (BRCT) domain-containing protein. | Bifunctional non-homologous end joining protein LigD. | 0.645 |
SIS28308.1 | SIS41247.1 | SAMN05421639_101136 | SAMN05421639_104650 | BRCA1 C Terminus (BRCT) domain-containing protein. | Bifunctional non-homologous end joining protein LigD. | 0.645 |
SIS28308.1 | polA | SAMN05421639_101136 | SAMN05421639_102662 | BRCA1 C Terminus (BRCT) domain-containing protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.537 |
SIS30694.1 | SIS28287.1 | SAMN05421639_101995 | SAMN05421639_101129 | DNA topoisomerase-1. | Putative mRNA 3-end processing factor. | 0.459 |
SIS30694.1 | SIS41241.1 | SAMN05421639_101995 | SAMN05421639_104649 | DNA topoisomerase-1. | Bifunctional non-homologous end joining protein LigD. | 0.698 |
SIS30694.1 | SIS41247.1 | SAMN05421639_101995 | SAMN05421639_104650 | DNA topoisomerase-1. | Bifunctional non-homologous end joining protein LigD. | 0.657 |
SIS30694.1 | dnaN_2 | SAMN05421639_101995 | SAMN05421639_101643 | DNA topoisomerase-1. | DNA polymerase-3 subunit beta. | 0.471 |
SIS30694.1 | ku | SAMN05421639_101995 | SAMN05421639_104648 | DNA topoisomerase-1. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.558 |
SIS30694.1 | polA | SAMN05421639_101995 | SAMN05421639_102662 | DNA topoisomerase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.511 |
SIS41241.1 | SIS28287.1 | SAMN05421639_104649 | SAMN05421639_101129 | Bifunctional non-homologous end joining protein LigD. | Putative mRNA 3-end processing factor. | 0.646 |
SIS41241.1 | SIS28308.1 | SAMN05421639_104649 | SAMN05421639_101136 | Bifunctional non-homologous end joining protein LigD. | BRCA1 C Terminus (BRCT) domain-containing protein. | 0.645 |
SIS41241.1 | SIS30694.1 | SAMN05421639_104649 | SAMN05421639_101995 | Bifunctional non-homologous end joining protein LigD. | DNA topoisomerase-1. | 0.698 |
SIS41241.1 | SIS41247.1 | SAMN05421639_104649 | SAMN05421639_104650 | Bifunctional non-homologous end joining protein LigD. | Bifunctional non-homologous end joining protein LigD. | 0.999 |
SIS41241.1 | dnaN_2 | SAMN05421639_104649 | SAMN05421639_101643 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase-3 subunit beta. | 0.948 |
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