A0A0D2P561 protein (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D2P561

F-box domain-containing protein. (249 aa)

Predicted Functional Partners:

A0A0D2UPV4

0.483

B456_N0247001

0.472

A0A0D2RTQ6

0.469

A0A0D2PKK9

0.464

A0A0D2U5N8

0.464

A0A0D2S7G6

0.458

A0A0D2PIV5

0.455

MED9

0.444

A0A0D2N697

0.442

A0A0D2RAL6

0.440

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2N697	A0A0D2P561	A0A0D2N697	A0A0D2P561	Uncharacterized protein.	F-box domain-containing protein.	0.442
A0A0D2N697	A0A0D2PKK9	A0A0D2N697	A0A0D2PKK9	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A0D2N697	A0A0D2RTQ6	A0A0D2N697	A0A0D2RTQ6	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A0D2N697	A0A0D2S7G6	A0A0D2N697	A0A0D2S7G6	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0D2N697	A0A0D2UPV4	A0A0D2N697	A0A0D2UPV4	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A0D2N697	B456_N0247001	A0A0D2N697	A0A0D2WAS3	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A0D2P561	A0A0D2N697	A0A0D2P561	A0A0D2N697	F-box domain-containing protein.	Uncharacterized protein.	0.442
A0A0D2P561	A0A0D2PIV5	A0A0D2P561	A0A0D2PIV5	F-box domain-containing protein.	Uncharacterized protein.	0.455
A0A0D2P561	A0A0D2PKK9	A0A0D2P561	A0A0D2PKK9	F-box domain-containing protein.	Uncharacterized protein.	0.464
A0A0D2P561	A0A0D2RAL6	A0A0D2P561	A0A0D2RAL6	F-box domain-containing protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.440
A0A0D2P561	A0A0D2RTQ6	A0A0D2P561	A0A0D2RTQ6	F-box domain-containing protein.	Uncharacterized protein.	0.469
A0A0D2P561	A0A0D2S7G6	A0A0D2P561	A0A0D2S7G6	F-box domain-containing protein.	Uncharacterized protein.	0.458
A0A0D2P561	A0A0D2U5N8	A0A0D2P561	A0A0D2U5N8	F-box domain-containing protein.	Uncharacterized protein.	0.464
A0A0D2P561	A0A0D2UPV4	A0A0D2P561	A0A0D2UPV4	F-box domain-containing protein.	Uncharacterized protein.	0.483
A0A0D2P561	B456_N0247001	A0A0D2P561	A0A0D2WAS3	F-box domain-containing protein.	Uncharacterized protein.	0.472
A0A0D2P561	MED9	A0A0D2P561	A0A0D2QFR4	F-box domain-containing protein.	Mediator of RNA polymerase II transcription subunit 9; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.444
A0A0D2PIV5	A0A0D2P561	A0A0D2PIV5	A0A0D2P561	Uncharacterized protein.	F-box domain-containing protein.	0.455
A0A0D2PIV5	B456_N0247001	A0A0D2PIV5	A0A0D2WAS3	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A0D2PKK9	A0A0D2N697	A0A0D2PKK9	A0A0D2N697	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A0D2PKK9	A0A0D2P561	A0A0D2PKK9	A0A0D2P561	Uncharacterized protein.	F-box domain-containing protein.	0.464