STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2RF58Uncharacterized protein. (303 aa)    
Predicted Functional Partners:
A0A0D2RQL9
Uncharacterized protein.
    
 
 0.922
A0A0D2UXZ7
Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.
    
 
 0.917
A0A0D2N239
Uncharacterized protein.
   
 
 0.903
A0A0D2RN71
N-acetyltransferase domain-containing protein.
   
 
 0.903
A0A0D2SAA9
Elp3 domain-containing protein.
   
 
 0.903
A0A0D2T8S2
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 
 0.903
A0A0D2NW66
Uncharacterized protein.
   
    0.825
A0A0D2RJH1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
    0.795
A0A0D2ME25
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.760
A0A0D2NIF4
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.760
Your Current Organism:
Gossypium raimondii
NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.
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