STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2RTK2Uncharacterized protein. (253 aa)    
Predicted Functional Partners:
A0A0D2Q6E0
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
  
     0.512
A0A0D2TXM7
Uncharacterized protein.
  
     0.512
A0A0D2UT73
mRNA cap 0 methyltransferase domain-containing protein.
  
     0.501
A0A0D2RFK2
Uncharacterized protein.
  
     0.470
A0A0D2LUT9
Uncharacterized protein.
  
     0.458
A0A0D2TNR4
Uncharacterized protein.
  
     0.444
A0A0D2VHB1
Uncharacterized protein.
  
     0.441
B456_N003300
Uncharacterized protein.
  
     0.441
A0A0D2PJA7
Homeobox domain-containing protein.
  
     0.439
A0A0D2P4I0
Uncharacterized protein.
  
     0.427
Your Current Organism:
Gossypium raimondii
NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.
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