STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2TPD1Uncharacterized protein; Belongs to the DEAD box helicase family. (444 aa)    
Predicted Functional Partners:
A0A0D2VZM6
Sas10 domain-containing protein.
   
 0.974
A0A0D2TPJ7
Uncharacterized protein.
   
 0.965
A0A0D2RXP2
NUC153 domain-containing protein.
   
 
 0.927
A0A0D2PUY7
WD_REPEATS_REGION domain-containing protein.
   
 0.915
A0A0D2RJH1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.909
A0A0D2R6A4
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.902
A0A0D2W0W9
Uncharacterized protein.
   
 0.870
A0A0D2QWD9
Uncharacterized protein.
   
 0.855
A0A0D2Q1K0
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.851
A0A0D2T7L8
Uncharacterized protein.
   
 0.849
Your Current Organism:
Gossypium raimondii
NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.