A0A0D2VEK6 protein (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D2VEK6

Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (79 aa)

Predicted Functional Partners:

A0A0D2TTY5

0.990

A0A0D2NA85

0.983

A0A0D2VFI4

0.982

A0A0D2UUS5

0.978

A0A0D2RWB5

0.976

A0A0D2V402

0.976

B456_N019400

0.976

A0A0D2Q829

0.974

A0A0D2PMX5

0.970

A0A0D2R2V2

0.967

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2NA85	A0A0D2PMX5	A0A0D2NA85	A0A0D2PMX5	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.985
A0A0D2NA85	A0A0D2Q829	A0A0D2NA85	A0A0D2Q829	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.994
A0A0D2NA85	A0A0D2R2V2	A0A0D2NA85	A0A0D2R2V2	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0D2NA85	A0A0D2RWB5	A0A0D2NA85	A0A0D2RWB5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.995
A0A0D2NA85	A0A0D2TTY5	A0A0D2NA85	A0A0D2TTY5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0D2NA85	A0A0D2UUS5	A0A0D2NA85	A0A0D2UUS5	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0D2NA85	A0A0D2V402	A0A0D2NA85	A0A0D2V402	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.995
A0A0D2NA85	A0A0D2VEK6	A0A0D2NA85	A0A0D2VEK6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.983
A0A0D2NA85	A0A0D2VFI4	A0A0D2NA85	A0A0D2VFI4	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.997
A0A0D2NA85	B456_N019400	A0A0D2NA85	A0A0D2VK42	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A0D2PMX5	A0A0D2NA85	A0A0D2PMX5	A0A0D2NA85	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein.	0.985
A0A0D2PMX5	A0A0D2R2V2	A0A0D2PMX5	A0A0D2R2V2	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein.	0.806
A0A0D2PMX5	A0A0D2RWB5	A0A0D2PMX5	A0A0D2RWB5	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.992
A0A0D2PMX5	A0A0D2TTY5	A0A0D2PMX5	A0A0D2TTY5	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein.	0.999
A0A0D2PMX5	A0A0D2UUS5	A0A0D2PMX5	A0A0D2UUS5	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein.	0.994
A0A0D2PMX5	A0A0D2V402	A0A0D2PMX5	A0A0D2V402	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.992
A0A0D2PMX5	A0A0D2VEK6	A0A0D2PMX5	A0A0D2VEK6	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.970
A0A0D2PMX5	A0A0D2VFI4	A0A0D2PMX5	A0A0D2VFI4	Ribosomal_TL5_C domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.946
A0A0D2PMX5	B456_N019400	A0A0D2PMX5	A0A0D2VK42	Ribosomal_TL5_C domain-containing protein.	Uncharacterized protein.	0.992
A0A0D2Q829	A0A0D2NA85	A0A0D2Q829	A0A0D2NA85	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.994