STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2VEW6Protein kinase domain-containing protein. (703 aa)    
Predicted Functional Partners:
A0A0D2Q6W2
Uncharacterized protein; Belongs to the cyclin family.
    
 0.726
A0A0D2RSR6
Uncharacterized protein; Belongs to the cyclin family.
    
 0.726
A0A0D2TSS3
Uncharacterized protein; Belongs to the cyclin family.
    
 0.726
A0A0D2VID7
Uncharacterized protein; Belongs to the cyclin family.
    
 0.726
A0A0D2TNU5
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.631
A0A0D2RTV5
CPSF_A domain-containing protein.
    
 
 0.605
A0A0D2S651
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.603
A0A0D2SSK1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.603
A0A0D2TNV3
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.564
A0A0D2VBI4
Spt4 domain-containing protein.
    
 0.564
Your Current Organism:
Gossypium raimondii
NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.
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