STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2W9H1Uncharacterized protein. (686 aa)    
Predicted Functional Partners:
A0A0D2TCI3
AAA_16 domain-containing protein.
   
    0.552
A0A0D2RRV6
PUM-HD domain-containing protein.
      
 0.517
A0A0D2SQ30
Nuclear pore protein.
      
 0.510
A0A0D2S185
Uncharacterized protein.
      
 0.507
A0A0D2N8T2
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
    0.504
A0A0D2M9G9
TPR_MLP1_2 domain-containing protein.
      
 0.501
A0A0D2PLL5
Uncharacterized protein.
      
 0.487
B456_N006700
TPR_REGION domain-containing protein.
   
  
 0.471
A0A0D2V8G0
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.457
A0A0D2QP24
Uncharacterized protein; Belongs to the complex I LYR family.
      
 0.449
Your Current Organism:
Gossypium raimondii
NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.
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