STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMF58302.1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)    
Predicted Functional Partners:
OMF49574.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.833
OMF59123.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.789
OMF52723.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
OMF58301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.724
OMF52787.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
OMF58289.1
PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.690
OMF55508.1
PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.690
OMF58300.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
OMF59124.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
OMF58288.1
PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.408
Your Current Organism:
Paenibacillus rhizosphaerae
NCBI taxonomy Id: 297318
Other names: CECT 5831, LMG 21955, LMG:21955, P. rhizosphaerae, Paenibacillus ciceri, Paenibacillus rhizosphaerae Rivas et al. 2005, strain CECAP06
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.