STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMF51541.1Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family. (345 aa)    
Predicted Functional Partners:
OMF57503.1
Chitin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.841
OMF51539.1
Carbohydrate-binding family 9-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.803
OMF57324.1
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.798
OMF51905.1
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
  
  
  0.767
OMF57460.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.753
OMF51540.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.747
OMF51534.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.735
OMF59107.1
Glycoside hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.719
OMF55595.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.719
OMF52705.1
Cytochrome (ubi)quinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.719
Your Current Organism:
Paenibacillus rhizosphaerae
NCBI taxonomy Id: 297318
Other names: CECT 5831, LMG 21955, LMG:21955, P. rhizosphaerae, Paenibacillus ciceri, Paenibacillus rhizosphaerae Rivas et al. 2005, strain CECAP06
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