STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMF50268.1Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)    
Predicted Functional Partners:
OMF50145.1
Trypsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.901
OMF58353.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
OMF53601.1
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
OMF48359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
OMF50613.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
OMF43604.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
OMF46878.1
Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
OMF58382.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
OMF54509.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
OMF58352.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.693
Your Current Organism:
Paenibacillus rhizosphaerae
NCBI taxonomy Id: 297318
Other names: CECT 5831, LMG 21955, LMG:21955, P. rhizosphaerae, Paenibacillus ciceri, Paenibacillus rhizosphaerae Rivas et al. 2005, strain CECAP06
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.