STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VITISV_024186DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)    
Predicted Functional Partners:
D7SV69_VITVI
RNA_pol_L_2 domain-containing protein.
   
 0.999
D7TDI5_VITVI
Uncharacterized protein.
   
 0.997
VITISV_017448
RPOL4c domain-containing protein.
   
 0.996
F6I5Z0_VITVI
RPOLD domain-containing protein.
   
 0.996
D7TMV8_VITVI
Uncharacterized protein.
   
 0.995
E0CTZ1_VITVI
Uncharacterized protein.
   
 0.995
D7T2A9_VITVI
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.989
D7T2B1_VITVI
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.989
D7TRJ8_VITVI
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.989
D7TXX3_VITVI
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
   
 0.989
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.