STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D6CH00_VITVIUncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (98 aa)    
Predicted Functional Partners:
F6H7M2_VITVI
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.655
E0CQ45_VITVI
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.590
D7TJ22_VITVI
Brix domain-containing protein.
   
  
 0.563
F6H1T7_VITVI
UPF0020 domain-containing protein.
   
 
 0.547
D7THA3_VITVI
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
  
 
 0.539
F6H187_VITVI
WD_REPEATS_REGION domain-containing protein.
   
    0.538
F6HX91_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 
 0.533
D7SW77_VITVI
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
  
 0.531
F6HEE2_VITVI
WD_REPEATS_REGION domain-containing protein.
   
    0.530
F6I202_VITVI
WD_REPEATS_REGION domain-containing protein.
   
    0.530
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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