STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7SMF7_VITVIPectate lyase. (403 aa)    
Predicted Functional Partners:
D7U111_VITVI
Uncharacterized protein.
   
 
 0.696
D7T323_VITVI
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.694
D7TI29_VITVI
Uncharacterized protein.
     
 0.694
D7TI31_VITVI
Uncharacterized protein.
     
 0.694
F6HGZ4_VITVI
Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.
   
 
 0.694
F6HL69_VITVI
Uncharacterized protein.
     
 0.694
F6HL70_VITVI
Uncharacterized protein.
     
 0.694
Q94B15_VITVI
Polygalacturonase PG1.
     
 0.694
D7TSF4_VITVI
Uncharacterized protein.
     
 0.690
F6HXC3_VITVI
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.690
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.