D7SVQ5_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7SVQ5_VITVI

Peptidase_M48 domain-containing protein. (363 aa)

Predicted Functional Partners:

D7TJ57_VITVI

0.705

D7T3N6_VITVI

0.558

F6HJF9_VITVI

0.499

GchI

0.499

F6HYK0_VITVI

0.489

VITISV_022385

0.485

D7STC8_VITVI

0.485

D7TWQ3_VITVI

0.485

D7U1N5_VITVI

0.485

E0CRD7_VITVI

0.485

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7STC8_VITVI	D7SVQ5_VITVI	D7STC8	D7SVQ5	Uncharacterized protein.	Peptidase_M48 domain-containing protein.	0.485
D7STC8_VITVI	F6HYK0_VITVI	D7STC8	F6HYK0	Uncharacterized protein.	SRP54 domain-containing protein.	0.451
D7STC8_VITVI	VITISV_022385	D7STC8	A5BUI1	Uncharacterized protein.	Uncharacterized protein.	0.901
D7SVQ5_VITVI	D7STC8_VITVI	D7SVQ5	D7STC8	Peptidase_M48 domain-containing protein.	Uncharacterized protein.	0.485
D7SVQ5_VITVI	D7T3N6_VITVI	D7SVQ5	D7T3N6	Peptidase_M48 domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.558
D7SVQ5_VITVI	D7TJ57_VITVI	D7SVQ5	D7TJ57	Peptidase_M48 domain-containing protein.	Uncharacterized protein.	0.705
D7SVQ5_VITVI	D7TWQ3_VITVI	D7SVQ5	D7TWQ3	Peptidase_M48 domain-containing protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.485
D7SVQ5_VITVI	D7U1N5_VITVI	D7SVQ5	D7U1N5	Peptidase_M48 domain-containing protein.	Uncharacterized protein.	0.485
D7SVQ5_VITVI	E0CRD7_VITVI	D7SVQ5	E0CRD7	Peptidase_M48 domain-containing protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.485
D7SVQ5_VITVI	F6HJF9_VITVI	D7SVQ5	F6HJF9	Peptidase_M48 domain-containing protein.	Uncharacterized protein.	0.499
D7SVQ5_VITVI	F6HYK0_VITVI	D7SVQ5	F6HYK0	Peptidase_M48 domain-containing protein.	SRP54 domain-containing protein.	0.489
D7SVQ5_VITVI	GchI	D7SVQ5	F6HPQ1	Peptidase_M48 domain-containing protein.	Uncharacterized protein.	0.499
D7SVQ5_VITVI	VITISV_022385	D7SVQ5	A5BUI1	Peptidase_M48 domain-containing protein.	Uncharacterized protein.	0.485
D7T3N6_VITVI	D7SVQ5_VITVI	D7T3N6	D7SVQ5	AA_TRNA_LIGASE_II domain-containing protein.	Peptidase_M48 domain-containing protein.	0.558
D7T3N6_VITVI	F6HYK0_VITVI	D7T3N6	F6HYK0	AA_TRNA_LIGASE_II domain-containing protein.	SRP54 domain-containing protein.	0.411
D7TJ57_VITVI	D7SVQ5_VITVI	D7TJ57	D7SVQ5	Uncharacterized protein.	Peptidase_M48 domain-containing protein.	0.705
D7TJ57_VITVI	D7TWQ3_VITVI	D7TJ57	D7TWQ3	Uncharacterized protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.986
D7TJ57_VITVI	D7U1N5_VITVI	D7TJ57	D7U1N5	Uncharacterized protein.	Uncharacterized protein.	0.985
D7TWQ3_VITVI	D7SVQ5_VITVI	D7TWQ3	D7SVQ5	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Peptidase_M48 domain-containing protein.	0.485
D7TWQ3_VITVI	D7TJ57_VITVI	D7TWQ3	D7TJ57	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.986