STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7T6U1_VITVIUncharacterized protein. (363 aa)    
Predicted Functional Partners:
VITISV_041221
Brix domain-containing protein.
   
  
 0.928
D7UBS0_VITVI
WD_REPEATS_REGION domain-containing protein.
   
    0.807
26N20_60
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
   0.793
D7TI65_VITVI
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
   0.792
D7TVM7_VITVI
Uncharacterized protein.
   
  
 0.750
F6HUU1_VITVI
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
  
 0.734
D7THK7_VITVI
WD_REPEATS_REGION domain-containing protein.
   
    0.723
D7U390_VITVI
Brix domain-containing protein.
   
    0.719
D7SMJ6_VITVI
RRP7 domain-containing protein.
   
    0.708
F6H187_VITVI
WD_REPEATS_REGION domain-containing protein.
   
    0.708
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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