D7TZN6_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7TZN6_VITVI

Uncharacterized protein. (438 aa)

Predicted Functional Partners:

D7TXN8_VITVI

0.762

F6HA09_VITVI

0.702

E0CU83_VITVI

0.630

D7U1H2_VITVI

0.622

F6I1U6_VITVI

0.622

D7TUA0_VITVI

0.612

D7UAV6_VITVI

0.611

D7TMW3_VITVI

0.607

D7TAA3_VITVI

0.603

F6HUC3_VITVI

0.603

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7TAA3_VITVI	D7TZN6_VITVI	D7TAA3	D7TZN6	GMPS ATP-PPase domain-containing protein.	Uncharacterized protein.	0.603
D7TAA3_VITVI	D7U1H2_VITVI	D7TAA3	D7U1H2	GMPS ATP-PPase domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.721
D7TAA3_VITVI	F6I1U6_VITVI	D7TAA3	F6I1U6	GMPS ATP-PPase domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.720
D7TMW3_VITVI	D7TZN6_VITVI	D7TMW3	D7TZN6	Uncharacterized protein.	Uncharacterized protein.	0.607
D7TUA0_VITVI	D7TZN6_VITVI	D7TUA0	D7TZN6	Uncharacterized protein.	Uncharacterized protein.	0.612
D7TXN8_VITVI	D7TZN6_VITVI	D7TXN8	D7TZN6	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	Uncharacterized protein.	0.762
D7TZN6_VITVI	D7TAA3_VITVI	D7TZN6	D7TAA3	Uncharacterized protein.	GMPS ATP-PPase domain-containing protein.	0.603
D7TZN6_VITVI	D7TMW3_VITVI	D7TZN6	D7TMW3	Uncharacterized protein.	Uncharacterized protein.	0.607
D7TZN6_VITVI	D7TUA0_VITVI	D7TZN6	D7TUA0	Uncharacterized protein.	Uncharacterized protein.	0.612
D7TZN6_VITVI	D7TXN8_VITVI	D7TZN6	D7TXN8	Uncharacterized protein.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.	0.762
D7TZN6_VITVI	D7U1H2_VITVI	D7TZN6	D7U1H2	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.622
D7TZN6_VITVI	D7UAV6_VITVI	D7TZN6	D7UAV6	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.611
D7TZN6_VITVI	E0CU83_VITVI	D7TZN6	E0CU83	Uncharacterized protein.	Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.630
D7TZN6_VITVI	F6HA09_VITVI	D7TZN6	F6HA09	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.702
D7TZN6_VITVI	F6HUC3_VITVI	D7TZN6	F6HUC3	Uncharacterized protein.	Uncharacterized protein.	0.603
D7TZN6_VITVI	F6I1U6_VITVI	D7TZN6	F6I1U6	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.622
D7U1H2_VITVI	D7TAA3_VITVI	D7U1H2	D7TAA3	Glutamine amidotransferase type-1 domain-containing protein.	GMPS ATP-PPase domain-containing protein.	0.721
D7U1H2_VITVI	D7TZN6_VITVI	D7U1H2	D7TZN6	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.622
D7U1H2_VITVI	F6HUC3_VITVI	D7U1H2	F6HUC3	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.720
D7UAV6_VITVI	D7TZN6_VITVI	D7UAV6	D7TZN6	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.611