D7U1G4_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7U1G4_VITVI

Uncharacterized protein. (357 aa)

Predicted Functional Partners:

F6HXR0_VITVI

0.810

F6HHM2_VITVI

0.809

D7TVD9_VITVI

0.806

D7SU98_VITVI

0.802

F6HXU3_VITVI

0.764

VITISV_040760

0.674

D7UAK0_VITVI

0.674

F6HVQ7_VITVI

0.674

F6HXS6_VITVI

0.570

F6HU19_VITVI

0.498

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SU98_VITVI	D7TVD9_VITVI	D7SU98	D7TVD9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.989
D7SU98_VITVI	D7U1G4_VITVI	D7SU98	D7U1G4	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.802
D7SU98_VITVI	D7UAK0_VITVI	D7SU98	D7UAK0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.963
D7SU98_VITVI	F6HHM2_VITVI	D7SU98	F6HHM2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.809
D7SU98_VITVI	F6HU19_VITVI	D7SU98	F6HU19	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.954
D7SU98_VITVI	F6HVQ7_VITVI	D7SU98	F6HVQ7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.963
D7SU98_VITVI	F6HXR0_VITVI	D7SU98	F6HXR0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.988
D7SU98_VITVI	F6HXS6_VITVI	D7SU98	F6HXS6	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nup96 domain-containing protein.	0.923
D7SU98_VITVI	F6HXU3_VITVI	D7SU98	F6HXU3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.983
D7SU98_VITVI	VITISV_040760	D7SU98	A5AEQ0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.963
D7TVD9_VITVI	D7SU98_VITVI	D7TVD9	D7SU98	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.989
D7TVD9_VITVI	D7U1G4_VITVI	D7TVD9	D7U1G4	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.806
D7TVD9_VITVI	D7UAK0_VITVI	D7TVD9	D7UAK0	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.984
D7TVD9_VITVI	F6HHM2_VITVI	D7TVD9	F6HHM2	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.805
D7TVD9_VITVI	F6HVQ7_VITVI	D7TVD9	F6HVQ7	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.984
D7TVD9_VITVI	F6HXR0_VITVI	D7TVD9	F6HXR0	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.990
D7TVD9_VITVI	F6HXS6_VITVI	D7TVD9	F6HXS6	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nup96 domain-containing protein.	0.959
D7TVD9_VITVI	F6HXU3_VITVI	D7TVD9	F6HXU3	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.989
D7TVD9_VITVI	VITISV_040760	D7TVD9	A5AEQ0	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.984
D7U1G4_VITVI	D7SU98_VITVI	D7U1G4	D7SU98	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.802