D7U742_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7U742_VITVI

Uncharacterized protein. (306 aa)

Predicted Functional Partners:

D7TI74_VITVI

0.981

SODCP

0.976

CSD1

0.974

D7TES2_VITVI

0.931

MNSOD

0.914

D7SJK0_VITVI

0.913

D7STJ2_VITVI

0.853

D7SHW3_VITVI

0.841

D7UCE7_VITVI

0.830

F6H502_VITVI

0.823

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSD1	D7SJK0_VITVI	F6HTY5	D7SJK0	Sod_Cu domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.972
CSD1	D7TES2_VITVI	F6HTY5	D7TES2	Sod_Cu domain-containing protein.	Uncharacterized protein.	0.972
CSD1	D7TI74_VITVI	F6HTY5	D7TI74	Sod_Cu domain-containing protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.901
CSD1	D7U742_VITVI	F6HTY5	D7U742	Sod_Cu domain-containing protein.	Uncharacterized protein.	0.974
CSD1	MNSOD	F6HTY5	F6HC76	Sod_Cu domain-containing protein.	Uncharacterized protein.	0.967
CSD1	SODCP	F6HTY5	D7SNA2	Sod_Cu domain-containing protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.922
D7SHW3_VITVI	D7SJK0_VITVI	D7SHW3	D7SJK0	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.841
D7SHW3_VITVI	D7STJ2_VITVI	D7SHW3	D7STJ2	Uncharacterized protein.	Uncharacterized protein.	0.842
D7SHW3_VITVI	D7TES2_VITVI	D7SHW3	D7TES2	Uncharacterized protein.	Uncharacterized protein.	0.841
D7SHW3_VITVI	D7U742_VITVI	D7SHW3	D7U742	Uncharacterized protein.	Uncharacterized protein.	0.841
D7SHW3_VITVI	D7UCE7_VITVI	D7SHW3	D7UCE7	Uncharacterized protein.	Uncharacterized protein.	0.970
D7SHW3_VITVI	F6H502_VITVI	D7SHW3	F6H502	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.968
D7SHW3_VITVI	MNSOD	D7SHW3	F6HC76	Uncharacterized protein.	Uncharacterized protein.	0.841
D7SJK0_VITVI	CSD1	D7SJK0	F6HTY5	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Sod_Cu domain-containing protein.	0.972
D7SJK0_VITVI	D7SHW3_VITVI	D7SJK0	D7SHW3	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Uncharacterized protein.	0.841
D7SJK0_VITVI	D7STJ2_VITVI	D7SJK0	D7STJ2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Uncharacterized protein.	0.853
D7SJK0_VITVI	D7TES2_VITVI	D7SJK0	D7TES2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Uncharacterized protein.	0.914
D7SJK0_VITVI	D7TI74_VITVI	D7SJK0	D7TI74	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.977
D7SJK0_VITVI	D7U742_VITVI	D7SJK0	D7U742	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Uncharacterized protein.	0.913
D7SJK0_VITVI	D7UCE7_VITVI	D7SJK0	D7UCE7	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Uncharacterized protein.	0.830