STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7U998_VITVIREPA_OB_2 domain-containing protein. (156 aa)    
Predicted Functional Partners:
F6GU63_VITVI
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.912
D7SQB0_VITVI
Uncharacterized protein.
   
 0.714
D7SU26_VITVI
RPA_C domain-containing protein.
   
 0.714
F6GVH0_VITVI
Uncharacterized protein.
    
 0.691
D7T529_VITVI
DNA helicase; Belongs to the MCM family.
   
 0.605
VITISV_031803
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.595
F6GUV3_VITVI
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.595
D7TBU5_VITVI
DUF1767 domain-containing protein.
    
 0.566
MCM4
DNA helicase; Belongs to the MCM family.
   
 0.564
D7TAF5_VITVI
CCHC-type domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
   
 
 0.551
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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