STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7UBW1_VITVIDEAD domain-containing protein. (130 aa)    
Predicted Functional Partners:
F6HKD0_VITVI
Matrin-type domain-containing protein.
    
 0.916
D7SZI2_VITVI
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.900
F6HQT0_VITVI
TOG domain-containing protein.
   
 0.848
F6I547_VITVI
Uncharacterized protein.
   
 0.848
F6I549_VITVI
Uncharacterized protein.
   
 0.848
VITISV_003384
Uncharacterized protein.
    
 0.795
F6H6T9_VITVI
Uncharacterized protein.
    
 0.795
RU1C_VITVI
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.752
D7TI88_VITVI
CPSF_A domain-containing protein.
   
 0.738
F6HK90_VITVI
Uncharacterized protein.
   
 0.738
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.