D7UCY2_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7UCY2_VITVI

Epimerase domain-containing protein. (326 aa)

Predicted Functional Partners:

F6GT25_VITVI

0.717

F6H6C2_VITVI

0.624

F6HUN1_VITVI

0.624

D7SV08_VITVI

0.622

D7T503_VITVI

0.622

VITISV_035625

0.613

D7TDY2_VITVI

0.613

VITISV_002374

0.611

D7UAE2_VITVI

0.611

VITISV_037724

0.610

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SV08_VITVI	D7T503_VITVI	D7SV08	D7T503	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.900
D7SV08_VITVI	D7TDY2_VITVI	D7SV08	D7TDY2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
D7SV08_VITVI	D7UAE2_VITVI	D7SV08	D7UAE2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S10 domain-containing protein.	0.989
D7SV08_VITVI	D7UCY2_VITVI	D7SV08	D7UCY2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Epimerase domain-containing protein.	0.622
D7SV08_VITVI	F6H6C2_VITVI	D7SV08	F6H6C2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	S10_plectin domain-containing protein.	0.995
D7SV08_VITVI	F6HUN1_VITVI	D7SV08	F6HUN1	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	S10_plectin domain-containing protein.	0.995
D7SV08_VITVI	VITISV_002374	D7SV08	A5AJ83	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S10 domain-containing protein.	0.995
D7SV08_VITVI	VITISV_035625	D7SV08	A5BH65	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
D7SV08_VITVI	VITISV_037724	D7SV08	A5BUA6	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.994
D7T503_VITVI	D7SV08_VITVI	D7T503	D7SV08	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.900
D7T503_VITVI	D7TDY2_VITVI	D7T503	D7TDY2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
D7T503_VITVI	D7UAE2_VITVI	D7T503	D7UAE2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S10 domain-containing protein.	0.989
D7T503_VITVI	D7UCY2_VITVI	D7T503	D7UCY2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Epimerase domain-containing protein.	0.622
D7T503_VITVI	F6H6C2_VITVI	D7T503	F6H6C2	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	S10_plectin domain-containing protein.	0.995
D7T503_VITVI	F6HUN1_VITVI	D7T503	F6HUN1	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	S10_plectin domain-containing protein.	0.995
D7T503_VITVI	VITISV_002374	D7T503	A5AJ83	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S10 domain-containing protein.	0.995
D7T503_VITVI	VITISV_035625	D7T503	A5BH65	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.990
D7T503_VITVI	VITISV_037724	D7T503	A5BUA6	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.994
D7TDY2_VITVI	D7SV08_VITVI	D7TDY2	D7SV08	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.990
D7TDY2_VITVI	D7T503_VITVI	D7TDY2	D7T503	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.990