F6GUP1_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6GUP1_VITVI

YTH domain-containing protein. (705 aa)

Predicted Functional Partners:

F6H6K1_VITVI

0.524

F6HU66_VITVI

0.519

D7U614_VITVI

0.422

F6HN83_VITVI

0.419

F6HN84_VITVI

0.419

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7U614_VITVI	F6GUP1_VITVI	D7U614	F6GUP1	Uncharacterized protein.	YTH domain-containing protein.	0.422
F6GUP1_VITVI	D7U614_VITVI	F6GUP1	D7U614	YTH domain-containing protein.	Uncharacterized protein.	0.422
F6GUP1_VITVI	F6H6K1_VITVI	F6GUP1	F6H6K1	YTH domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.524
F6GUP1_VITVI	F6HN83_VITVI	F6GUP1	F6HN83	YTH domain-containing protein.	zf-C3H1 domain-containing protein.	0.419
F6GUP1_VITVI	F6HN84_VITVI	F6GUP1	F6HN84	YTH domain-containing protein.	Uncharacterized protein.	0.419
F6GUP1_VITVI	F6HU66_VITVI	F6GUP1	F6HU66	YTH domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.519
F6H6K1_VITVI	F6GUP1_VITVI	F6H6K1	F6GUP1	Uncharacterized protein; Belongs to the MT-A70-like family.	YTH domain-containing protein.	0.524
F6H6K1_VITVI	F6HU66_VITVI	F6H6K1	F6HU66	Uncharacterized protein; Belongs to the MT-A70-like family.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.996
F6HN83_VITVI	F6GUP1_VITVI	F6HN83	F6GUP1	zf-C3H1 domain-containing protein.	YTH domain-containing protein.	0.419
F6HN83_VITVI	F6HN84_VITVI	F6HN83	F6HN84	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.951
F6HN84_VITVI	F6GUP1_VITVI	F6HN84	F6GUP1	Uncharacterized protein.	YTH domain-containing protein.	0.419
F6HN84_VITVI	F6HN83_VITVI	F6HN84	F6HN83	Uncharacterized protein.	zf-C3H1 domain-containing protein.	0.951
F6HU66_VITVI	F6GUP1_VITVI	F6HU66	F6GUP1	Uncharacterized protein; Belongs to the MT-A70-like family.	YTH domain-containing protein.	0.519
F6HU66_VITVI	F6H6K1_VITVI	F6HU66	F6H6K1	Uncharacterized protein; Belongs to the MT-A70-like family.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.996