F6GUW8_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6GUW8_VITVI

Uncharacterized protein; Belongs to the GST superfamily. (352 aa)

Predicted Functional Partners:

DHAR

0.758

F6HSH9_VITVI

0.739

D7TV25_VITVI

0.687

D7TBD5_VITVI

0.679

GOR

0.675

Gr

0.669

D7T674_VITVI

0.667

F6HUD1_VITVI

0.658

F6H344_VITVI

0.656

VITISV_034775

0.655

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T674_VITVI	D7TBD5_VITVI	D7T674	D7TBD5	1-Cys peroxiredoxin.	Uncharacterized protein.	0.930
D7T674_VITVI	D7TV25_VITVI	D7T674	D7TV25	1-Cys peroxiredoxin.	Glutathione synthetase.	0.912
D7T674_VITVI	DHAR	D7T674	A5AHY0	1-Cys peroxiredoxin.	Uncharacterized protein; Belongs to the GST superfamily.	0.909
D7T674_VITVI	F6GUW8_VITVI	D7T674	F6GUW8	1-Cys peroxiredoxin.	Uncharacterized protein; Belongs to the GST superfamily.	0.667
D7T674_VITVI	F6H344_VITVI	D7T674	F6H344	1-Cys peroxiredoxin.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.928
D7T674_VITVI	F6HSH9_VITVI	D7T674	F6HSH9	1-Cys peroxiredoxin.	Uncharacterized protein; Belongs to the GST superfamily.	0.909
D7T674_VITVI	F6HUD1_VITVI	D7T674	F6HUD1	1-Cys peroxiredoxin.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.928
D7T674_VITVI	GOR	D7T674	D7SQK6	1-Cys peroxiredoxin.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.940
D7T674_VITVI	Gr	D7T674	D7TS92	1-Cys peroxiredoxin.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.940
D7T674_VITVI	VITISV_034775	D7T674	A5AU08	1-Cys peroxiredoxin.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.937
D7TBD5_VITVI	D7T674_VITVI	D7TBD5	D7T674	Uncharacterized protein.	1-Cys peroxiredoxin.	0.930
D7TBD5_VITVI	D7TV25_VITVI	D7TBD5	D7TV25	Uncharacterized protein.	Glutathione synthetase.	0.978
D7TBD5_VITVI	DHAR	D7TBD5	A5AHY0	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.901
D7TBD5_VITVI	F6GUW8_VITVI	D7TBD5	F6GUW8	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.679
D7TBD5_VITVI	F6H344_VITVI	D7TBD5	F6H344	Uncharacterized protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.923
D7TBD5_VITVI	F6HSH9_VITVI	D7TBD5	F6HSH9	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.901
D7TBD5_VITVI	F6HUD1_VITVI	D7TBD5	F6HUD1	Uncharacterized protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.923
D7TBD5_VITVI	GOR	D7TBD5	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.921
D7TBD5_VITVI	Gr	D7TBD5	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.921
D7TBD5_VITVI	VITISV_034775	D7TBD5	A5AU08	Uncharacterized protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.923