STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6GWV2_VITVIProtein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (194 aa)    
Predicted Functional Partners:
D7T9Y7_VITVI
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.689
E0CV99_VITVI
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.655
D7SLE4_VITVI
Uncharacterized protein.
      
 0.645
VITISV_008139
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.640
VITISV_028490
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
 
 0.634
D7TFL3_VITVI
Uncharacterized protein.
    
 
 0.452
F6HWL2_VITVI
Uncharacterized protein.
    
 
 0.452
D7TKQ8_VITVI
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
 
 0.432
F6HLR4_VITVI
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
    
 
 0.404
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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