STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6GYZ0_VITVIUncharacterized protein. (59 aa)    
Predicted Functional Partners:
F6I4J3_VITVI
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.691
D7U2U2_VITVI
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.638
E0CUX2_VITVI
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.638
F6HZY6_VITVI
Uncharacterized protein.
  
    0.514
F6HUY1_VITVI
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.509
F6H3P9_VITVI
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.504
D7U390_VITVI
Brix domain-containing protein.
   
    0.489
F6H4N4_VITVI
Probable ribosome biogenesis protein VIT_07s0031g01200; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.480
F6HAX1_VITVI
Sas10 domain-containing protein.
   
    0.480
F6HJC9_VITVI
PseudoU_synth_1 domain-containing protein.
  
 
 0.480
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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