STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6H2W4_VITVIAA_TRNA_LIGASE_II domain-containing protein. (544 aa)    
Predicted Functional Partners:
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
 
 0.974
D7SRQ8_VITVI
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.972
D7TUY0_VITVI
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.972
E0CP72_VITVI
tRNA-synt_1g domain-containing protein.
  
 0.972
F6GWJ1_VITVI
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.972
D7TTM6_VITVI
tRNA-synt_1g domain-containing protein.
  
 0.941
D7T3N6_VITVI
AA_TRNA_LIGASE_II domain-containing protein.
  
0.939
D7U2U2_VITVI
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.909
E0CUX2_VITVI
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.909
F6I4J3_VITVI
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.889
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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