STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6H3U6_VITVIRetrotrans_gag domain-containing protein. (409 aa)    
Predicted Functional Partners:
D7THT1_VITVI
Nuclear pore protein.
   
 0.874
D7TC07_VITVI
Uncharacterized protein.
   
 0.873
F6HG89_VITVI
Nup54 domain-containing protein.
   
 0.867
F6H2J0_VITVI
C2H2-type domain-containing protein.
   
 0.862
D7T4Q9_VITVI
Uncharacterized protein.
    
 0.851
D7TVD9_VITVI
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
   
 0.831
GATC
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
   
 0.812
D7SU98_VITVI
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.812
F6HXR0_VITVI
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.811
F6HXU3_VITVI
Uncharacterized protein.
   
 0.811
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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