F6H414_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6H414_VITVI

Uncharacterized protein. (823 aa)

Predicted Functional Partners:

F6HAX1_VITVI

0.979

F6HZ72_VITVI

0.926

D7T7H3_VITVI

0.925

F6GWW2_VITVI

0.925

F6HF03_VITVI

0.922

D7TR15_VITVI

0.912

F6H683_VITVI

0.912

D7U2A7_VITVI

0.910

F6HLF1_VITVI

0.910

F6I3W1_VITVI

0.910

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T7H3_VITVI	D7TR15_VITVI	D7T7H3	D7TR15	Uncharacterized protein.	Uncharacterized protein.	0.951
D7T7H3_VITVI	D7U2A7_VITVI	D7T7H3	D7U2A7	Uncharacterized protein.	Uncharacterized protein.	0.993
D7T7H3_VITVI	F6GWW2_VITVI	D7T7H3	F6GWW2	Uncharacterized protein.	Uncharacterized protein.	0.544
D7T7H3_VITVI	F6H414_VITVI	D7T7H3	F6H414	Uncharacterized protein.	Uncharacterized protein.	0.925
D7T7H3_VITVI	F6H683_VITVI	D7T7H3	F6H683	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.976
D7T7H3_VITVI	F6HAX1_VITVI	D7T7H3	F6HAX1	Uncharacterized protein.	Sas10 domain-containing protein.	0.990
D7T7H3_VITVI	F6HF03_VITVI	D7T7H3	F6HF03	Uncharacterized protein.	Uncharacterized protein.	0.996
D7T7H3_VITVI	F6HLF1_VITVI	D7T7H3	F6HLF1	Uncharacterized protein.	Uncharacterized protein.	0.993
D7T7H3_VITVI	F6HZ72_VITVI	D7T7H3	F6HZ72	Uncharacterized protein.	Uncharacterized protein.	0.945
D7T7H3_VITVI	F6I3W1_VITVI	D7T7H3	F6I3W1	Uncharacterized protein.	S1 motif domain-containing protein.	0.985
D7TR15_VITVI	D7T7H3_VITVI	D7TR15	D7T7H3	Uncharacterized protein.	Uncharacterized protein.	0.951
D7TR15_VITVI	D7U2A7_VITVI	D7TR15	D7U2A7	Uncharacterized protein.	Uncharacterized protein.	0.988
D7TR15_VITVI	F6GWW2_VITVI	D7TR15	F6GWW2	Uncharacterized protein.	Uncharacterized protein.	0.950
D7TR15_VITVI	F6H414_VITVI	D7TR15	F6H414	Uncharacterized protein.	Uncharacterized protein.	0.912
D7TR15_VITVI	F6HAX1_VITVI	D7TR15	F6HAX1	Uncharacterized protein.	Sas10 domain-containing protein.	0.991
D7TR15_VITVI	F6HF03_VITVI	D7TR15	F6HF03	Uncharacterized protein.	Uncharacterized protein.	0.992
D7TR15_VITVI	F6HLF1_VITVI	D7TR15	F6HLF1	Uncharacterized protein.	Uncharacterized protein.	0.972
D7TR15_VITVI	F6HZ72_VITVI	D7TR15	F6HZ72	Uncharacterized protein.	Uncharacterized protein.	0.973
D7TR15_VITVI	F6I3W1_VITVI	D7TR15	F6I3W1	Uncharacterized protein.	S1 motif domain-containing protein.	0.973
D7U2A7_VITVI	D7T7H3_VITVI	D7U2A7	D7T7H3	Uncharacterized protein.	Uncharacterized protein.	0.993