STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6H5Q8_VITVIUncharacterized protein. (428 aa)    
Predicted Functional Partners:
D7SL21_VITVI
B30.2/SPRY domain-containing protein.
   
 
 0.707
F6GVB5_VITVI
WD_REPEATS_REGION domain-containing protein.
    
 
 0.696
F6HK80_VITVI
Uncharacterized protein.
    
 
 0.690
F6HK22_VITVI
Plus3 domain-containing protein.
   
 
 0.626
D7TGP5_VITVI
Plus3 domain-containing protein.
    
 
 0.625
D7TWK0_VITVI
WD_REPEATS_REGION domain-containing protein.
    
 
 0.578
F6GWN2_VITVI
WD_REPEATS_REGION domain-containing protein.
    
 
 0.578
VITISV_002271
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.521
D7UAU1_VITVI
Uncharacterized protein.
    
 
 0.420
E0CQU8_VITVI
Uncharacterized protein.
    
 
 0.420
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.