F6H9A2_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6H9A2_VITVI

Uncharacterized protein. (381 aa)

Predicted Functional Partners:

F6GTR9_VITVI

0.964

F6I011_VITVI

0.904

F6HQV0_VITVI

0.839

E0CV06_VITVI

0.827

F6HQ30_VITVI

0.819

F6HXP6_VITVI

0.813

F6GWK5_VITVI

0.807

F6I105_VITVI

0.805

F6I1J3_VITVI

0.805

F6HRL7_VITVI

0.802

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0CV06_VITVI	F6H9A2_VITVI	E0CV06	F6H9A2	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Uncharacterized protein.	0.827
E0CV06_VITVI	F6HXP6_VITVI	E0CV06	F6HXP6	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
F6GTR9_VITVI	F6H9A2_VITVI	F6GTR9	F6H9A2	Uncharacterized protein.	Uncharacterized protein.	0.964
F6GTR9_VITVI	F6I011_VITVI	F6GTR9	F6I011	Uncharacterized protein.	Uncharacterized protein.	0.935
F6GWK5_VITVI	F6H9A2_VITVI	F6GWK5	F6H9A2	HECT domain-containing protein.	Uncharacterized protein.	0.807
F6GWK5_VITVI	F6HQV0_VITVI	F6GWK5	F6HQV0	HECT domain-containing protein.	HECT domain-containing protein.	0.906
F6GWK5_VITVI	F6HRL7_VITVI	F6GWK5	F6HRL7	HECT domain-containing protein.	Uncharacterized protein.	0.634
F6GWK5_VITVI	F6I011_VITVI	F6GWK5	F6I011	HECT domain-containing protein.	Uncharacterized protein.	0.680
F6GWK5_VITVI	F6I105_VITVI	F6GWK5	F6I105	HECT domain-containing protein.	HECT domain-containing protein.	0.904
F6H9A2_VITVI	E0CV06_VITVI	F6H9A2	E0CV06	Uncharacterized protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.827
F6H9A2_VITVI	F6GTR9_VITVI	F6H9A2	F6GTR9	Uncharacterized protein.	Uncharacterized protein.	0.964
F6H9A2_VITVI	F6GWK5_VITVI	F6H9A2	F6GWK5	Uncharacterized protein.	HECT domain-containing protein.	0.807
F6H9A2_VITVI	F6HQ30_VITVI	F6H9A2	F6HQ30	Uncharacterized protein.	MPN domain-containing protein.	0.819
F6H9A2_VITVI	F6HQV0_VITVI	F6H9A2	F6HQV0	Uncharacterized protein.	HECT domain-containing protein.	0.839
F6H9A2_VITVI	F6HRL7_VITVI	F6H9A2	F6HRL7	Uncharacterized protein.	Uncharacterized protein.	0.802
F6H9A2_VITVI	F6HXP6_VITVI	F6H9A2	F6HXP6	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.813
F6H9A2_VITVI	F6I011_VITVI	F6H9A2	F6I011	Uncharacterized protein.	Uncharacterized protein.	0.904
F6H9A2_VITVI	F6I105_VITVI	F6H9A2	F6I105	Uncharacterized protein.	HECT domain-containing protein.	0.805
F6H9A2_VITVI	F6I1J3_VITVI	F6H9A2	F6I1J3	Uncharacterized protein.	Uncharacterized protein.	0.805
F6HQ30_VITVI	F6H9A2_VITVI	F6HQ30	F6H9A2	MPN domain-containing protein.	Uncharacterized protein.	0.819