STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HA50_VITVIUncharacterized protein. (837 aa)    
Predicted Functional Partners:
D7SWB0_VITVI
SH3 domain-containing protein.
  
     0.515
D7TCF0_VITVI
Uncharacterized protein.
  
    0.486
F6HQ67_VITVI
CID domain-containing protein.
  
     0.471
F6HIX6_VITVI
Uncharacterized protein.
  
 
  0.466
F6HI40_VITVI
Uncharacterized protein.
    
  0.464
F6HTQ6_VITVI
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
     0.464
D7T494_VITVI
Rab-GAP TBC domain-containing protein.
  
     0.453
F6H1H4_VITVI
DUF4091 domain-containing protein.
  
     0.451
D7T123_VITVI
Uncharacterized protein.
  
     0.419
D7T1I0_VITVI
C2H2-type domain-containing protein.
  
     0.412
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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